Package index • managecrownsdata

Image proccessing

Generate and align orthomosaics

generate_Mosa(): Implement Time-SIFT in R

align_Mosa(): Implement AROSICS in R

Extract crowns data

Fine-tune the arrangement of plots by reordering or splitting axes into separate panels. These functions allow for more detailed customization of plot layouts.

create_nonNA_bbox(): Extract and export the non NA area of images.

extract_crownsImages(): Extract crowns images

extract_rgbValues(): Extract RGB metrics

pivot_Labels(): Format labels values from wide data to long data

merge_values(): Merge labels and rgb values

Plots

Plot crowns data

heatmap_Labels(): Plot the heatmap of Labels

plot_signal(): Plot the spectral signal over time

Others functions

check_availableCrowns(): Check the number of crowns included in each image

check_crownsFile(): Check the crown file compatibility

create_files_architecture(): Create the recommended files architecture

create_labelingFile(): Create xlsx labeling file

extr_dates(): Extract dates from files names